Journal Club

2024.1.25 Nishibu M
Kumar J et al., (2023) Efficient protein tagging and cis-regulatory element engineering via precise and directional oligonucleotide-based targeted insertion in plants. Plant Cell 35: 2722-2735.

2024.1.18 Yabu H
Khait I et al., (2023) Sounds emitted by plants under stress are airborne and informative. Cell 186: 1328-1336.

Okiyama H
Robuschi L et al., (2023) Arabidopsis thaliana phosphoinositide-specific phophholipase C 2 is required for Botrytis cinerea prolifiration. Plant Sci 340: 111971.

Ono M 
Wu et al., (2018) Functional conservation and divergence of soybean GmSTOP1 members in proton and aluminum tolerance. Front Plant Sci 9: 570.

2024.1.11 Toyama S
Nagai et al (2020) Antagonistic regulation of the gibberellic acid response during stem growth in rice. Nature 584: 109-114.

2023.12.14 Xiao Y
Ge J et al (2023) Boron alleviates the aluminum toxicity in tartary buckwheat by regulating antioxidant defense system and maintaining osmotic balance. J Soil Sci Plant Nutr doi: 10.1007/s42729-023-01515-w.

Hirano T
Xu et al (2022) Comparative genomics of orobanchaceous species with different parasitic lifestyles reveals the origin and stepwise evolution of plant parasitism. Mol Plant 15: 1384-1399.

Miyake C
Ramesh SA et al (2022) Pitrotoxin delineates different transport configurations for malate and gamma-aminobutyric acid through TaALMT1. Biology (Basel) 11: 1162.

2023.12.7 特別セミナー
Dr. Gábor Galiba (Centre for Agricultural Research, Hungarian Academy of Sciences)
  “I. Involvement of the different Rht dwarfing alleles in the light spectrum-regulated cold acclimation of wheat. II. Indoor plant production.”

Raziq A et al (2022) Exogenous spermidine modulates polyamine metabolism and improves stress responsive mechanisms to protect tomato seedlings against salt stress. Plant Physiol Biochem 187: 1-10

Mitai K
Schröder P, Hsu BY, Gutsche N, Winkler JB, Hedtke B, Grimm B, Schwechheimer C (2023) B-GATA factors are required to repress high-light stress responses in Machantia polymorpha and Arabidopsis thaliana. Plant Cell Environ  46: 2376-2390.

2023.2.9 Sugekawa K
Jamsheer MK, Jindal S, Sharma M, Awasthi P, Sreejath S, Sharma M, Mannully CT, Laxmi A (2022) A negative feedback loop of TOR signaling balances grwth and stress-response trade-offs in plants. Cell Rep 39: 

Kumazawa Y
He C, Liew LC, Yin L, Lewsey MG, Whelan J, Berkowitz O (2022) The retrograde signaling regulator ANAC017 recruits the MKK9-MPK3/6, ethylene, and auxin signaling pathways to balance mitochondrial dysfunction with growth. Plant Cell 34: 3460-3481.

2022.12.22 Shmizu Y
Kalachova T, Skrabalkova E, Pateyron S, Soubigou-Taconnat L, Djafi N, Collin S, Sekeres J, Burketova L, Potocky M, Pejchar P, Ruelland E (2022) Diacyaglycerol kinase 5 participates in flagellin-induced signaling in Arabidopsis. Plant Physiol 190: 1978-1996.

2022.12.15 Mitai K
Novák J et al. (2021) Limited light intensity and low temperature: Can plants survive freezing in light conditions that more accurately replicate the cold season in temperate regions? Environ Exp Bot 190: 104581.

Miyachi T
Wu TY, Goh HZ, Azodi CB, Krishnamoorthi S, Liu MJ, Urano D (2022) Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response. Nat Plants 7: 787-799.

2022.12.8 Hayami N
Liu B, Zhao F, Zhou H, Xia Y, Wang X (2022) Photoprotection conferring plant tolerance to freezing stress through rescuing photosystem in evergreen Rhododendron. Plant Cell Environ 45: 2093-2108.

Islam Md. A U
Jiang F,  Lyi SM, Li L, Wang T, Liu J (2022) Involvement of cytokinins in STOP1-mediated resistance to proton toxicity. Stress Biol 2: Article 17.

2022.12.1 Ezeh OS
Li Z, Sheerin DJ, von Roepenack-Lahaye E, Stahi M, Hiltbrunner A (2022) The phytochrome interacting proteins ERF55 and ERF58 repress light-induced seed germination in Arabidopsis thaliana. Nat Commun 13: Article 1656.

2022.11.10 Xiao YF
Ahn G, Jung IJ, Cha JY, Jeong SY, Shin GI, Ji MG, Kim MG, Lee SY, Kim WY (2022) Phytochrome B positively regulates red light-mediated ER stress response in Arabidopsis. Frontiers Plant Sci 13: Article 846294. 

Debbarma A
Kayani SI, Shen Q, Rahman Su, Fu X, Li Y, Wang C, Hassani D, Tang K (2021) Transcriptional regulation of flavonoid biosynthesis in Artemisia annua by AAaYABBY5. Hort Res 8: Article #257.

Sakashita S
Urra M, Buezo J, Royo B, Cornejo A, López-Gómez P, Cerdán D, Esteban R, Martínez-Merino V, Gogorcena Y, Tavladoraki P, Moran JF (2022) The importance of the urea cycle and its rlationships to polyamine metabolism during ammonium stress in Medicago truncatula. J Exp Bot 

2022.7.29 Mitai K
Zeng X, Jiang Jm Wang F, Liu W, Zhang S, Du J, Yang C (2021) Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway. Plant Biol 24: 52-61.

Watanabe H
Ginanjar EF, Teh O, Fujita T (2022) Characterisation of rapid alkalinisation factors in Physcomitrium patens reveals functional conservation in tip growth. New Phytologist 233: 2442-2457.

2022.5.27 Sakashita S
Liu S et al, (2022) The interaction between CitMYB52 and CitbHLH2 negatively regulates citrate accumulation by activating CitALMT in citrus fruit. Front Plant Sci 13: Article 848869.

Xiao Y
Zheng P et al, (2022) MYB43 as a novel substrate for CRL4PRL1 E3 ligases negatively regulates cadmium tolerance through transcriptional inhibition of HMAs in Arabidopsis. New Phytologist 234: 884-901.

2022.5.13 Kouame PK
Roy S et al, (2022) Application of synthetic peptide CEP1 increases nutrient uptake rates along plant roots. Frontiers Plant Sci 12: 793145.

Ezeh OS
Wang F et al., (2022) SIFHY3 and SIFHY5 act compliantly to enhance cold tolerance through the integration of myo-inositol and light signaling in tomato. New Phytologist 233: 2127-2143.

2022.5.6 Miyachi T
Yang Y, Lee JH, Poindexter MR, Shao Y, Liu W, Lenaghan SC, Ahkami AH, Blumwald E, Stewart Jr CN (2021) Rational design and testing of abiotic stress-inducible synthetic promoters from poplar cis-regulatory elements. Plant Biotechnol J 19: 1354-1369.

Miyake C
Ribeiro AP et al. (2021) Enhanced aluminum tolerance in sugarcane: evaluation of SbMATE overexpression and genome-wide identification of ALMTs in Saccharum spp. BMC Plant Biol 21: 300.

2022.4.22 Mizuno K
Quan X et al. (2021) Genome-wide association study uncover the genetic architecture of salt tolerance-related traits in common wheat (Triticum aestivum L.). Front Genet 12: 663941.

 Hirano T
Yamada S, Ozaki H, Noguchi K (2020) The mitochondrial respiratory chain maintains the photosynthetic electron flow in Arabidopsis thaliana leaves under high-light stress. Plant Cell Physol 61: 283-295.

2022.1.20 Matsui D
Zheng X et al. (2019) Actin filaments are dispensable for bulk autophagy in plants. Autophagy 15: 2126-2141.

Mitai K
Espinoza-Corral r, Schwenkeert S, Lundquist PK. (2021) Molecular changes of Arabidopsis thaliana plastoglobules facilitate thylakoid membrane remodeling under high light stress. Plant J 106: 1571-1587.

2021.12.23 Sugimoto S
Riegler S et al. (2021) Light regulates alternative splicing outcomes via the TOR kinase pathway. Cell Rep 36: 109676.

2021.12.16 Miyachi T
Kakei Y, Masuda H, Nishizawa NK, Hattori H, Aung MS (2021) Elucidation of novel cis-regulatory elements and promoter structures involved in  iron excess response mechanisms in rice using a bioinformatics approach. Front Plant Sci 12: 660303.

Ito S
Ravelo-Ortega G et al. (2021) The growth of Arabidopsis primary root is repressed by several and diverse amino acids through auxin-dependent and independent mechanisms and MPK6 kinase activity. Plant Sci 302: 110717.

2021.11.25 Yamada Y
Lee S, Wang W, Huq E (2021) Spatial regulation of thermomorphogenesis by HY5 and PIF4 in Arabidopsis Nat Commun 12: 3656.

Watanabe H
Spinedi N et al., (2021) ROS-scavenging enzymes as an antioxidant response to high concentration of anthracene in the liverwort Marchantia polymorpha L. Plants (MDPI) 10: 1478.

2021.11.18 Tai S
Zhang F et al. (2021) Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics. Plant Cell 33: 2538-2561.

2021.11.11 Ezeh Okechukwu S
Yang K et al., (2021) The C2H2-type zinc finger transcription factor MdZAT10 negatively regulates drought tolerance in apple. Plant Physiol Biochem 167: 390-399.

Kouame Koffi P
Adams E, Miyazaki T, Watanabe S, Ohkama-Ohtsu N, Seo M, Shin R (2020) Gluthatione and its biosynthetic intermediates alleviate Cesium Stress in Arabidopsis. Front Plants Sci 10: 1711.

2021.10.11 Mitai K
Burko Y, Seluzicki A, Zander M, Pedmale UV, Ecker JR, Chory J (2020) Chimeric activators and repressors define HY5 activity and reveal a light-regulated feedback mechanism. Plant Cell 32: 967-983.(2回目、2回目はなしです。不許可!)

2021.10.5 Ezeh Okechukwu S
Bittner A, van Buer J, Baier M (2020) Cold priming uncouples light- and cold-regulation of gene expression in Arabidopsis thaliana. BMC Plant Biol 20: 281. (2回目)

2021.9.27 Sugimoto S
IkedaH, Suzuki T, Oka Y, Gustafsson ALS, Brochmann C, Mochizuki N, Nagatani A (2021) Divergence in red light responses associated with thermal reversion of phytochrome B between high- and low-latitude species.  New Phytol 231: 75-84.

Yamada Y
Bittner A, van Buer J, Baier M (2020) Cold priming uncouples light- and cold-regulation of gene expression in Arabidopsis thaliana. BMC Plant Biol 20: 281.

2020.121.22 Ito S
Niu F, Jiang Q, Sun X, Hu Z, Wang L, Zhang H (2020) Metabolic profiling of DREB-overexpressing transgenic wheat seeds by liquid chromatography-mass spectrometry. Crop J 8: 1025-1036.

2020.12.15 Miyachi T
Zhang S, Wang Li, Sun X, Li Y, Yao J, van Nocker S, Wang X (2019) Genome-wide analysis of the YABBY gene family in grapevine and functional characterization of VvYABBY4. Frontiers Plant Sci. 10:1207.

Matsui T
Duan Z, Tanaka M, Kanazawa T, Haraguchi T, Takyu A, Era A, Ueda T, Ito K, Tominaga M (2020) Characterization of ancestral myosin XI from Marchantia polymorpha by heterologous expression in Arabidopsis thaliana. Plant J 104: 460-473.

2020.12.8 Sugimoto S
Sun T, Zhou F, Huang XO, Chen WC, Kong MJ, Zhou CF, Zhuang Z, Li L, Lu S (2019) ORANGE represses chloroplast biogenesis in etiolated Arabidopsis cotyledons via interaction with TCP14. Plant Cell 31: 2996-3014.

Mitai K 
Antosz W, Doferges J, Begcy K, Bruckmann A, Poirier Y, Dresselhaus T, Grasser KD/ (2020) Critical role of thrascript cleavage in Arabidosis RNA polymerase II transcriptional elongation. Plant Cell 32: 1449-1463.

2020.12.1 Tsuda H
Song Q, Joshi M, DiPiazza J, Joshi V (2020) Functional relevance of citrulline in the vegetative tissues of watermelon during abiotic stresses. Frontiers Plant Sci 11: 512.

Kodama W
Huang J, Zhao X, Chory J (2019) The Arabidopsis transcriptome responds specifically and dynamically to high light stress. Cell Rep 29: 4186-4199.

2020.11.24  Uno S
VanBuren R, Pardo J,Wai CM, Evans S, Bartles D (2019) Massive tandem proliferation of ELIP2 supports convergent evolution of desiccation tolerance across land plants. Plant Physiol 179: 1040-1049.

2020.11.10 Mitsushima H
Norizuki T, Kanazawa T, Minamino N, Tsukaya H, Ueda T (2019) Marchantia polymorpha, a new model plant for autophagy studies. Frontiers Plant Sci 10: 935.

Agrahari RK
Trujillo-Hernandez JA, Bariat L, Enders TA, Strader LC, Reichheld J-P, Belin C (2020) A gluthathione-dependent control of the indole butyric acid pathway supports Arabidopsis root system adaptation to phosphate deprivation. J Exp Bot 16: 4843-4857.

2020.10.20 Hasegawa M
Qiu T et al, (2020) The SAUR41 subfamily of SMALL AUXIN UP RNA genes is abscisic acid inducible to modulate cell expansion and salt tolerance in Arabidopsis thaliana seedlings. Ann Bot 125: 805-819.

2020.9.29 Maruyama H
Shinozawa A,,,Taji T, Sakata Y (2019) SnRK2 protein kinases represent an ancient system in plants for adaptation to a terrestrial environment. Commun Biol 2: 30.

2020.9.15 Tai S
Temme AA, Kerr KL, Masalia RR, Burke JM, Donovan L (2020) Key traits and genes associated with salinity tolerance independent from vigor in cultivated sunflower. Plant Physiol (in press)

2020.9.8 Kawaguchi H
Guo J, Zhang Y, Gao H, Li S, Wang Z-Y, Huang C-F (2020) Mutation of HPR1 encoding a component of the THO/TREX complex reduces STOP1 accumulation and aluminium resistance in Arabidopsis thaliana. New Phytologist 228: 179-193.

2020.9.1 Yamada Y
Burko Y, Seluzicki A, Zander M, Pedmale UV, Ecker JR, Chory J (2020) Chimeric activators and repressors define HY5 activity and reveal a light-regulated feedback mechanism. Plant Cell 32: 967-983.

2020.8.4 Kodama W
Galvao VC, Fiorucci A-S, Trevisan M, Franco-Zorilla JM, Goyal A, Schmid-Siegert E, Solano R, Fankhauser C (2019) PIF transcription factors link a neighbor threat cue to accelerated reproduction in Arabidopsis. Nat Commu 10: 4005.

2020.7.28 Tsuda H
Zhang QY et al (2020) BTB-TAZ domain protein MdBT2 modulates malate accumulation and vacuolar acidification in response to nitrate. Plant Physiol 183: 750-764.

2020.7.21 Uno S
Fichman Y, Miller G, MIttler R (2019) Whole-plant live imaging of reactive oxygen species. Mol Plant 12: 1203-1210.

2020.7.14 Hayami N
Nagano AJ, Kawagoe T, Sugisaka J, Honjo MN, Iwayama K, Kudoh H (2019) Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation. Nat Plants 5: 74-83.

2020.7.7 Hasegawa M
Godon C, Mercier C, Wang X, David P, Richaud P, Nussaume L, Liu D, Desnos T (2019) Under phosphate starvation conditions, Fe and Al trigger accumulation of the transctiption factor STOP1 in the nucleus of Arabidopsis root cells. Plant J 99: 937-949.

Mitsushima H
Westermann J, Streubel S, Franck CM, Lentz R, Dolan L, Boisson-Dernier A (2019) An evolutionarily conserved receptor-like kinases signaling module controls cell wall integrity during tip growth. Curr Biol  29: 3899-3908.

2020.2.4 Agrahari RK
Lee E, Vanneste S, Pérez-Sancho J, Benitez-Fuente F, Strelau M, Macho AP, Botella MA, Friml J, Rosado A (2019) Ionic stress enhances ER-PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. PNAS 116: 1420-1429.

Maruyama H
Han X, Chang X, Zhang Z, Chen H, He H, Zhong B, Deng XW (2019) Origin and evolution of core components responsible for monitoring light environment changes during plant terrestrialization. Mol Plant 12: 847-862.

Nakano Y
Azodi CB, Pardo J, VanBuren R, de los Campos G, Shiu S-H (2020) Transcriptome-based prediction of complex traits in maize. Plant Cell 32: 139-151.

2020.1.28 Hiratsuka T
Yamauchi S, Mano S, Oikawa K, Hikino K, Teshima KM, Kimori Y, Nishimura M, Shinazaki K, Takemiya A (2019) Autophagy controls reactive oxygen species homeostasis in guard cells that is essential for stomatal opening. PNAS 116: 19187-19192.

2020.1.21 Osawa T
Konishi M, Yanagisawa S (2019) The role of protein-protein interactions mediated by the PB1 domain of NLP transcription factors in nitrate-inducible gene expression. BMC Plant Biol 19:90.

Tanabe R
Yoshida T, Obata T, Feil R, Fujita Y, Yamaguchi-Shinozaki K, Fernie AR (2019) The role of abscisic acid signaliing in maintaining the metabolic balance required for Arabidopsis growth under nonstress conditions. Plant Cell 31: 84-105.

Kawaguchi H
Feng W,,, Dinneny JR (2018) The FERONIA receptor kinase maintains cell-wall integrity during salt stress through Ca2+ signaling. Curr Biol 28: 666-675.

2020.1.14 Tai S
Justamante MS, Ibanez S, Peidro A, Perez-Perez JM (2019) A genome-wide association study identifies new loci involved in wound-induced lateral root formation in Arabidopsis thaliana. Front Plant Sci 10: 311.

Ito K
Norizuki T, Kanazawa T, Minamino N, Tsukaya H, Ueda T (2019)Marchantia polymorpha, a new model plant for autophagy studies. Front Plant Sci 10: 935.

Yamada Y
Dong J, Sun N, Yang J, Deng Z, Lan J, Qin G, He H, Deng XW, Irish VF, Chen H, Wei N (2019) The transcription factors TCP4 and PIF3 antagonistically regulate organ-specific light induction of SAUR genes to modulate cotyledon opening during de-etiolation in Arabidopsis. Plant Cell 31: 1155-1170.

2019.6.24 Hiratsuka T
Kuroha T,,,Ashikari M (2018) Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.
 Science 361: 181-186.

Tsuchiya T
Wang H,,, Wang X (2018) Abscisic acid signaling inhibits brassinosteroid signaling through dampening the dephosphorylation of BIN2 by ABI1 and ABI2. Mol Plant 11: 315-325.

2019. 5.31 Tsuda H
Kuroha T,,,,Ashikari M (2018) Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science 361: 181-186.

2019.5.27 Maruyama H
Zhao C,,,,Pogson BJ, Chen ZH (2019) Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land. PNAS 116: 5015-5020.

Mutte SK, Kato H, Rothfels C, Melkonian M, Wong GKS, Weijers D (2018) Origin and evolution of the nuclear auxin response system. eLIFE 7: e33399.

2019.5.10 Tai S
Ye J et al (2017) An InDel in the promoter of Al-ACTIVATED MALATE TRANSPORTER9 selected during tomato domestication determines fruit malate contents and aluminum tolerance. Plant Cell 29: 2249-2266.

Kawaguchi H
Zhang Z et al (2017) Natural variation in CTB4a enhances rice adaptation to cold habitats.

2019.4.22 Tanabe R
Crisp PA,,, Pogson BJ (2017)
Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis. Plant Cell 29: 1836-1863.

Yamada Y
Lin F, Jiang Y, Li J, Yan T, Fan L, Liang J, Chen ZJ, Xu D, Deng XW (2019) B-Box domain protein 28 negatively regulates photomorphogenesis by repressing the activity of transcrtiption factor HY5 and undergoes COP1-mediated degradation.

2019.2.7 Osawa T
Maeda Y, Konishi M, Kiba T, Sakuraba Y, Sawaki N, Kurai T, Ueda Y, Sakakibara H, Yanagisawa S (2018) A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis. Nat Commun 9: 1376.

Hayami N
Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, PanterPE, Knight H, Nimmo HG, Zhang R, Brown WS (2018) Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome. Plant Cell 30: 1424-1444.

2019.1.24 Nakano Y
Rodriguez-Leal D, Lemmon ZH, Man J, Bartlett ME, Lippman ZB (2017) Engineering quantitative trait variation for crop improvement by genome editing. Cell 171: 470-480. 

2018.12.20 Hiramatsu S
Frank A, Matiolli CC, Viana AJC, Hearn TJ, Kusakina J, Belbin FE, Newman DW, Yochikawa A, Cano-Ramirez DL, Chembath A, Cragg-Barber K, Haydon MJ, Hotta CT, Vincentz M, Webb AAR, Dodd AN (2018) Circadian entrainment in Arabidopsis by the sugar-responsive transcription factor bZIP63. Curr Biol 28: 2597-2606.e6

Iwasa A
Richardson LGL, Small EL, Inoue H, Schnell DJ (2018) Molecular topology of the transit peptide during chloroplast protein import. Plant Cell 30: 1789-1806.

2018.7.24 Hiramatsu S
Liu Y, Zhang W, Zhang K, You Q, Yan H, Jiao Y, Jiang J, Xu W, Su Z (2017) Genome-wide mapping of DNase I hypersensitive sites reveals chromatin accessibility changes in Arabidopsis euchromatin and hetero chromatin regions under extended darkness. Sci Rep 7: 4093.

Enomoto T
Zhang Y, Beard KFM, Swart C, Bergmann S, Krahnert I, Nikoloski Z, Graf A, Ratcliffe RG, Sweetlove LJ, Fernie AR, Obata T (2017) Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle. Nat Commun 8: 15212.

Tsuda H
Perchlik M, Tegeder M (2017) Improving plant nitrogen use efficiency through alteration of amino acid transport processes. Plant Physiol 175: 235-247.

2018.7.16 Iwasa A
Guo P, Li Z, Huang P, Li B, Fang S, Chu J, Guo H (2017) A tripartite amplification loop involving the transcription factor WRKY75, salicylic acid, and reactive oxygen species accelerates leaf senescence. Plant Cell 29: 2854-2870.

2018.7.10 Agrahari RK
Kamranfar I, Xue GP, Tohge T, Sedaghatmehr M, Fermie AR, Balazadeh S, Muller-Roeber B (2018) Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence. New Phytol 218: 1543-1557.

Maruyama H
Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential unit competption subsides. PLOS Genet 14: e1007348.

2018.3.15 Hiramatsu S
Gangappa SN, Berriri S, Kumar SV (2017) PIF4 coordinates thermosensory growth and immunity in Arabidopsis. Curr Biol 27: 243-249.

2018.3.8 Maruyama H
Guo J et al (2018) Bph6 encodes an exocyst-localized protein and confers broad resistance to planthoppers in rice. Nat Genet 50: 297-306.

Iwasa A
Duan M, Zhang R, Zhu F, Zhang Z, Gou L, Wen J, Dong J, Wang T (2017) A lipid-anchored NAC transcription factor is translocated into the nucleus and activates Glyoxalase I expression during drought stress. Plant Cell 29: 1748-1772.

2018.3.1 Kodama W
Yu Q, Lutz KA, Maliga P (2017) Efficient plastid transformation in Arabidopsis. Plant Physiol 175: 186-193.


2018.2.8 Ahgrahari RK
He L, Wu W, Zinta G, Yang L, Wang D, Liu R, Zhang H, Zheng Z, Huang H, Zhang Q, Zhu J-K  (2018) A naturally occurring epiallele associated with leaf senescence and local climate adaptation in Arabidopsis accessions. Nat Commu 9: 460.

Senoo M
Wang Y, Li R, Li D, Jia X, Zhou D, Li J, Lyi SM, Hou S, Huang Y, Kochian LV, Liu J (2017) NIP1;2 is a plasma membrane-localized transporter mediating alminum uptake, translocation, and tolerance in Arabidopsis. Proc Natl Acad Sci USA 114: 5047-56052.

2018.2.1 Araki H
Dumont S, Bykova N, Pelletier G, Dorion S, Rivoal J (2016) Cytosolic triosephosphate isomerase from Arabidopsis thaliana is reversibly modified by glutathione on cysteines 127 and 218. Front Plant Sci 22: 1942. 

Nakano T
Badran AH et al (2016) Continuous evolution of Bacillus thuringiensis toxins overcomes insect resistance. Nature 533: 58-63.

2018.1.25 Ayan

2018.1.18 Kusunoki K
O’Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A,   Nery JR, Galli M, Gallavotti A, Ecker JR (2017)  Cistrome and epicistrome features shape the regulatory DNA landscape. Cell 19: 1280-1292.

2018.1.11 Ito H

Takahashi S, Monda K, Higaki T, Hashimoto-Sugimoto M, Negi J, Hasezawa S, Iba K (2017) Differential effects of phophatidylinositol 4-kinase (PI4K) and 3-kinase (PI3K) inhibitors on stomatal responses to environmental signals. Front Plant Sci 8: 677.

2017.12.21 Hiratsuka T
Shahmuradov IA, Kh R, Solovyev VV (2017) TSSPlant: a new tool for prediction of plant Pol II promoters. Nucleic Acids Res 45: e65. 

Tsuchiya T
Kim YS, An C, Park S, Gilmour SJ, Wang L, Renna L, Brandizzi F, Grumet R, Thomashow MF (2017) CAMTA-mediated regulation of salicylic acid immunity pathway genes in Arabidopsis exposed to low temperature and pathogen infection. Plant Cell 29: 2465-2477.

2017.12. 14 Kamiya M
Laxa M, Müller K, Lange N, Doering L, Pruscha JT, Peterhänsel C (2016) The 5‘UTR intron of Arabidopsis GGT1 aminotransferase enhances promoter activity by recruiting RNA polymerase II. Plant Physiol 172: 313-327.

Osawa T
Karve R, Suarez-Roman F, Iyer-Pascuzzi AS (2016) The transcription factor NIN-LIKE PROTEIN7 controls border-like cell release. Plant Physiol 171: 2101-2111.

2017.12.7 Enomoto T

2017.9.14 Tsuchiya T
de Lorenzo L, Sorenson R, Bailey-Serres J, Hunt AG (2017) Noncanonical alternative polyadenylation contributes to gene regulation in response to hypoxia.  Plant Cell 29: 1262-1277.

2017.8.31 Hiratsuka T
Gangappa SN, Kumar V (2017) DET1 and HY5 control PIF4-mediated thermosensory elongation growth through distinct mechanisms. Cell Rep 18: 344-351.

Osawa T
Yu L-H, Wu J, Tang H, Yuan Y, Wang S-M, Wang Y-P, Zhu Q-S, Li S-G, Xiang C-B (2016) Overexpression of Arabidopsis NPL7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep 6: 27795.

2017.8.3 Senoo M
Zu X-Y, Ding Z-J, Chen L, Yan J-Y, Zheng S-J  (2015) An eukaryotic translation initiation factor, AteIF5A-2, affects cadmium accumulation and sensitivity in Arabidopsis. J Integr Plant Biol 57: 848-458.

2017.7.20 Kamiya M
Ren Y, Li Y, Jiang Y, Wu B, Miao Y (2017) Phosphorylation of WHIRLY1 by CIPK14 shifts its localization and dual functions in Arabidopsis. Mol Plants 10: 749-763.

Huang C
Hayashi S, Hirayama T (2016) agh12 is a dominant proteasome mutant that affects multiple regulatory systems for germination of Arabidopsis. Sci Rep 6: 25351.

2017.6.22 Wu LJ
Wang LJ et al, (2017) The inhibition of protein translation mediated by AtGCN1 is essential for cold tolerance in Arabidopsis thaliana. Plant Cell Environ 40: 56-68.

2017. 6.15 Kusunoki K
Kawakatsu T,,, Weigel D, Nordborg M, Ecker JR (2016) Epigenomic diversity in a global collection of Arabidopsis thaliana accessions. Cell 166: 492-505.

Araki H
Shimizu T,,, Shinji Masuda (2017) Sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesis. PNAS  114: 2355-2360.

2017.6.1 Nakano T
Schor IE et al, (2017) Promoter shape varies across populations and affects promoter evolution and expression noise. Nat Genet 49: 350-

2017.5.25  Hayami N
Griggiths CA et al, (2016) Chemical intervention in plant sugar signalling increases yield and resilience. Nature  540: 574-578.

Enomoto T

2017.2.28 Chaokun H
Ligaba-Osena A, Fei Z, Liu J, Xu Y, Shaff J, Lee S-C, Luan S, Kudla J, Kochian L, Pineros M (2017) Loss-of-function mutation of the calcium sensor CBL1 increases alminum sensitivity in Arabidopsis. New Phytol (in press)

Hiratsuka T
MeJia-Guerra MK, Li W, Galeano NF, Vidal M, Gray J, Doseff AI, Grotewold E (2015) Plant Cell 27: 3309-3320.

2017.2.7 Tsuchiya T
Gasch P, Fundinger M, Müller JT, Lee T, Bailey-Serres J, Mustroph A (2016) Redundant ERF-VII transcription factors bind to an evolutionarily conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis. Plant Cell 28: 160-180.

20171.31 Osawa T
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Zhang J, Baetz U, Krugel U, Martinoia E, De Angeli A (2013) Identification of a probable pore forming domain in the multimeric vacuolar anion channel AtALMT9. Plant Physiol (in press)

2013.8.30 Saito T
Chen D, Xu G, Tang W, Jing Y, Ji Q, Fei Z, Lin R (2013) Antagonistic basic helix-loop-helix/bZIP transcription factors form transcriptional modules that integrate light and reactive oxygen species signaling in Arabidopsis. Plant Cell 25: 1657-1673.

2013.8.23 Hieno A
Rinke et al. (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature (in press)

2013.7.5 Kobayashi Yasu
Demir F, Horntrich C, Blachutzik JO, Scherzer S, Reinders Y, Kierszniowska S, Schulze WX, Harms GS, Hedrich R, Geiger D, Kreuzer I (2013) Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3. PNAS 110: 8296-8301.

2013.6.14 Sugimoto M
Shkolnik-Inbar D, Adler G, Bar-Zvi D (2013) ABI4 downregulates expression of the sodium transporter HKT1;1 in Arabidopsis roots and affects salt tolerance. Plant J 73: 993-1005.

Zhao C-R
Christ A, Maegele I, Ha N, Nguyen HH, Crespi MD, Maizel A (2013) In silico identification and in vivo validation of a set of evolutionary conserved plant root-specific cis-regulatory elements. Mechanisms Dev 130: 70-81.

Nakano Y
Tang R-J, Liu H, Yang L, Gao X-S, Garcia VJ, Luan S, Zhang H-X (2012) Tonoplast calcium sensors CBL2 and CBL3 control plant growth and ion homeostasis through regulating V-ATPase activity in Arabidopsis. Cell Res 22: 1650-1665.

2013.6.7 Asai M
Bose J, Babourina O, Shabala S, Rengel Z (2013) Low-pH and aluminum resistance in Arabidopsis correlates with high cytosolic magnesium content and increased magnesium uptake by plant roots. Plant Cell Physiol (advance access).

2013.5.31 Toskizawa M
Baxter L et al (2012) Conserved noncoding sequences highlight shared components of regulatory networkds in dicotyledonous plants. Plant Cell 24: 3949-3965.

Enomoto T
Kim C, Meskauskience R, Zhang S, Lee KP, Ashok ML, Blajecka K, Herrfurth C, Feussner I, Apel K (2012) Chloroplasts of Arabidopsis are the source and a primary target of a plant-specific programmed cell death signaling pathway. Plant Cell 24: 3026-3039.

2013.5.17 Hieno A
Windram O,,, Denby KJ (2012) Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered y hi-resolution temporal transcriptomic analysis. Plant Cell 24: 3530-3557.

Ito H
Yokotani N, Ichikawa T, Kondou Y, Iwabuchi M, Matsui M, Hirochika H, Oda K (2013) Role of the rice transcription factor JAmyb in abiotic stress response. J Plant Res 126: 131-139.

2013.5.10 Sawaki K
Finkemeier I,  König A-C, Head W, Nunes-Nesi A, Pham PA, Leister D, Fernie AR, Sweetlove LJ (2013) Transcriptomic analysis of the role of carboxylic acids in metabolite signaling in Arabidopsis thaliana leaves.  Plant Physiol 162: 239-253.

Ohashi S
Krtkova J, Havelkova L, Krepelova A, Fiser R, Vosolsobe S, Novotna Z, Martinec J, Schwarzerova K (2012) Loss of membrane fluidity and endocytosis inhibition are involved in rapid alminum-induced root growth cessation in Arabidopsis thaliana. Plant Physiol Biochem 60: 88-97.

2013.4.26 Eguma M
Stein RJ, Waters BM (2012) Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots. J Exp Bot 63: 1039-1055.

Ishino H
Gerotto C, Alboresi A, Giacometti GM, Bassi R, Morosinotto T (2011) Role of PSBS and LHCSR in physcomitrella patens acclimation to high light and low temperature. Plant Cell Environ 34: 922-932.

Sadhukhan A
Rasmussen S,,, Mundy J (2013) Transcriptome responses to combinations of stresses in Arabidopsis. Plant Physiol 161: 1783-1794.

2013.2.5 Yamamoto YY
Wang L, Si W, Yao Y, Tian D, Araki H, Yang S (2012) Genome-wide survey of pseudogenes in 80 fully re-sequenced Arabidopsis thaliana. PLoS One 7: e51769.

Saito T
Lee CM, Thomashow MF (2012) Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana. Proc Natl Acad Sci USA 109: 15054-9.

Hayami N
Kim JS,,, Yamaguchi-Shinozaki K (2012) Arabdiopsis GROWTH-REGULATING FACTOR7 functions as a transcriptional repressor of abscisic acid- and osmotic stress-responsive genes, including DREB2A. Plant Cell 24: 3393-3405.

2013.1.29 Naznin HA
Bhardwaj V, Meier S, Petersen LN, Ingle RA, Roden LC (2011) Defense responses of Arabidopsis thaliana to infection by Pseudomonas syringae are regulated by the circadian clock. PLoS One 6 (10) e26968.

Enomoto T
Greenway H, Kulichikhin KY, Cawthray GR, Colmer TD (2012) pH regulation in anoxic rice coleoptiles at pH 3.5: biochemical pHstats and net H+ influx in the absence and presence of NO3.

2013.1.15 Naito A
Johnson MP, Goral TK, Duffy CDP, BrainAPR, Mullineaux, CW, Ruban AV (2011) Photoprotective energy dissipation involves the reorganization of photosystem II light-harvesting complexes in the grana membranes of spinach chloroplasts. Plant Cell 23, 1468-1679.

2013.1.8 Asai M
Yan Y, Wang QL, Geng MJ, Guo ZH, Zhao Za (2011) Effect of indole-3-acetic acid on aluminum-induced efflux of malic acid from wheat. Plant Soil 346, 215-230.

Nakano Y
Chao DY, Silva A, Baxter I, Huang YS, Nordborg M, Danku J, Lahner B, Yakubova E, Salt DE (2012) Genome-Wide Association Studies Identify Heavy Metal ATPase3 as the Primary Determinant of Natural Variation in Leaf Cadmium in Arabidopsis thaliana. PLoS Genet., 8(9):e1002923.

2012.12.18 Tokizawa M
Gamuyao R,,, Heuer S (2012) The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency. Nature 488, 535-539.

Zhao CR
Zheng L, Yamaji N, Yokosho K, Ma JF (2012) YSL16 is a phloem-localized transporter of the copper-nicotinamine complex that is responsible for copper distribution in rice. 24, 3767-3782.

Sakai Y
Tsuda K, Qi Y, Nguen LV, Bethke G, Tsuda Y, Glazebrook J, Katagiri F (2012) An efficient Agrobacterium-mediated transient transformation of Arabidopsis. Plant J 69, 713-719.

2012.12.11 Ito H
Narsai R, Rocha M, Geigenberger P, Whelan J, van Dongen JT (2011) Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia. New Phytologist 190, 472-487.

Kobayashi Yasuhumi
Boudscq M, Willmann MR, McCormack M, Lee H, Shan L, He P, Bush J, Cheng S-H, Sheen J (2010) Differential innate immune signalling via Ca2+ sensor protein kinases. Nature 464,  418-422.

2012.12.4 Ohashi S
Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JDG (2010) Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proc Natl Acad Sci, USA 107, 10302-10307.

Yamanaka H
Liu J, Luo X, Shaff J, Liang C, Jia X, Li Z, Magalhaes J (2012) A promoter-swap strategy between the AtALMT1 and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance. Plant J 71, 327-337.

Ishino H
Gou J-Y, Felippes FF, Liu C-J, Weigel D, Wang J-W (2011) Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. Plant Cell 23, 1512-1522.

2012.11.20 Hieno A
Lai Z, Wang F, Zheng Z, Fan B, Chen Z (2011) A critical role of autophagy in plant resistance to necrotrophic fungal pathogens. Plant J 66, 953-968.

Sugimoto M
Lopez-Gomez M, Sandal N, Stougaard J, Boller T (2012) Interplay of flg22-induced defence responses and nodulation in Lotus japonicus. J Exp Bot 63, 393-401.

2012.10.30 Sawaki K
Ali Z,,, Yun D-J (2012) TsHKT1;2, a HKT1 homolog from the extremophile Arabidopsis relative Thellungiella salsuginea, shows K(+) specificity in the presence of NaCl. Plant Physiol 158, 1463-74.
Wu H-J,,, Qi Xie. Insights into salt tolerance from the genome of Thellungiella salsuginea. Proc Natl Acad Sci, USA 109, 12219-12224.

2012.10.9 Zhao C-R
Cheng ZC, Yamaji N, Motoyama R, Nakamura Y, Ma JF (2012) Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice. Plant Physiol 159, 1624-1633.

Naznin HA
Mackey D, Holt III BF, Wiig A, Dangl JL (2002) RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743-454.
Mackey D, Belkhadir Y, Alonso JM, Ecker JR, Dangl JL (2003) Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell 112, 379-389.

2012.9.18 Yamanaka H
Rodriguez GR, Munos S, Anderson C, Sim S-C, Michel A, Causse M, Gardener BBM, Francis D, van der Knaap E (2011) Distribution of SUN, OBATE, LC, and FAS in the tomato germplasm and the relationship to fruit shape diversity. Plant Physiol 156, 275-285.

Tokizawa M
Freitag J, Ast J, Bolker M (2012) Cryptic peroxisomal targeting via alternative splicing and stop codon read-through in fungi. Nature 485, 522-525.

2012.8.22  特別セミナー
Dr. Robert Cox III (RIKEN BASE)
 “Data Driven Design: How to integrate multiple databases for designing synthetic regulatory promoters”

2012.8.21 Sakai Y
Osakabe K, Osakabe Y, Yoki S (2010) Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases. Proc Natl Acad Sci, USA 107, 12034-12039.

2012.7.31 Asai M
Zhao J, Wang C, Bedair M, Welti R, Sumner LW, Baxter I, Wang X (2011) Suppression of phospholipase Dγs confers increased alminum resistance in Arabidopsis thaliana. PLoS ONE 6, e28086.

2012.7.24 Hieno A
Chiba S, Kondo H, Tani A, Saisho D, Sakamoto W, Kanematsu S, SUzuki N (2011) Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes. PLoS Pathogens 7 (7): e1002146.

2012.7.17 Sawaki K
Bemal M et al (2012) Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of ion homeostasis in Arabidopsis. Plant Cell 24, 738-761.

Sugimoto M
dit Frey et al, (2012) Plasma membrane calcium ATPases are important components of receptor-mediated signaling in plant immune responses and development. Plant Physiol 159, 798-809.

2012.6.26 Yamamoto YY
Gan X,,, Mott R (2011) Mutiple rererence genomes and transcriptomes for Arabidopsis thaliana. Nature 477, 719-423.
Zhang X, Cal AJ,Borevitz JO (2011) Genetic architecture of regulatory variation in Arabidopsis thaliana. Genome Res 21, 725-733.

Kobayashi Yuriko
Wu et al (2008) Suppression of cotton bollworm in multiple crops in China in areas with Bt toxin-containing cotton. Science 321, 
Lu et al, (2012) Widespread adoption of Bt cotton and insecticide decrease promotes biocontrol services. Nature (in press).

2012.6.19 Kobayashi Yasuhumi
Edgar RS,,,,Millar AJ,,,Reddy AB (2012) Peroxiredoxins are conserved markers of circadian rhythms. Nature 
(in press)

2012.6.12 Yamanaka H
Kesari R, Lasky JR, Vilamor G, Des Marais DL, Chen YJC, Liu TW (2012) Intron-mediated alternative splicing of Arabidopsis P5CS1 and its association with natural variation in proline and climate adaptation. Proc Natl Acad Sci, USA (in press)

2012.6.5 Zhao CR
Fujii M, Yokosho K, Yamaji N, Saisho D, Yamane M, Takahashi H, Sato K, Nakazono M, Ma JF (2011) Acquisition of aluminum tolerance by modification of a single gene in barley. Nat Commun 3, 713.

Oyama N: 2nd Place
Gissoli G, Ninoles R, Frasquet S, Palombieri S, Bueso E, Rubio L, GFarcia-Sanchez MJ, Fernandez JA, Mulet JM, Serrano R (2012) Peptidyl-prolyl cis-trans isomerase ROF2 modulates intracellular pH homeostasis in Arabidopsis. Plant J 70, 704-716.

Ohashi S
Fujita M, Fujita Y, Iuchi S, Yamada K, Kobayashi Y, Urano K, Kobayashi M, Yamaguchi-Shinozaki K, Shinozaki K (2012) Natural variation in a polyamine transporter determines paraquat tolerance in Arabidopsis. Proc Natl Acad Sci, USA, 109, 6343-6347.

2012.5.15 Hieono A
Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BACM, Baulcombe DC (2012) A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell 24, 859-874.

Eguma M
Wu H, Chen C, Du J, Liu H, Cui Y, Zhang Y, He Y, Wang Y, Chu C, Feng Z, Li J, Ling HQ (2011) Co-Overexpression FIT with AtbHLH38 or AtbHLH39 in Arabidopsis-Enhanced Cadmium Tolerance via Increased Cadmium Sequestration in Roots and Improved Iron Homeostasis of Shoots. Plant Physiol 158, 790-800.

2012.5.8 特別セミナー
岐阜大・応生 高島康弘先生
「Apicomplexaと家畜の病気 -トキソプラズマとネオスポラ-」

Tokizawa M: 3rd Place
Rhee HS, Pugh BF (2012) Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483, 251-255.

Ishino H
Alboresi A, Gerotto C, Giacometti GM, Bassi R, Morosinotto T (2010) Physcomitrella patens mutants affected on heat dissipation clarify the evolution of photoprotection mechanisms upon land colonization. Proc Natl Acad Sci, USA 107, 11128-11133.

Yoshioka Y: 1st Place
Luna L, Bruce TJA, Roberts MR, Flors V, Ton J (2012) Next-generation systemic acquired resistance. Plant Physiol 158, 844-853.

2011.12.8 Zhao CR
Wu Y, Deng Z, Lai J, Zhang Y, Yang C, Yin B, Zhao Q, Zhang L, Li Y, Yang C, Xie Q (2009) Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responses. Cell Res 19, 1279-1290.

Naznin HA
Oirdi ME, Rahman TAE, Rigano L, Hadrami AE, Rodriguez MC, Daayf F, Vojnov A, Bouarab K (2011) Botrytis cinerea manipulates the antagonistic effects between immune pathways to promote desease development in tomato. Plant Cell 23, 2405-2421.

2011.12.1 Yamashita Y
Wanke D, Hohenstatt ML, Dynowski M, Bloss U, Hecker A, Elgass K, Hummel S, Hahn A, Caesar K, Schleifenbaum F, Harter K, Berendzen KW (2011) Alanine zipper-like coiled-coil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus. PLoS ONE 6, e16070.

Sawaki K
Yang S, Wu J, Yang X, Zayed A, Rajani MS. Zhou D, Basra A, Schachtman D, Peng M, Armstrong C, Caldo R, Morrell J, Lacy M, Staub J (2011) Gene expression biomarkers provide sensitive indicators of in planta nitrogen status in maize. Plant Physiol (preview Oct 6, 2011)

Yoshioka Y
Zou C, Sun K, Mackaluso JD, Seddon AE, Thomashow MF, Shiu SH (2011) Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana. Proc Natl Acad Sci, USA 108, 14992-14997.

2011.11.24 Tokizawa M
Licausi P, Kosmacz M, Weits DA, Giuntoli B, Giordi FM, Voesenek LACJ, Pereta P, van Dongen JT (2011) Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization. Nature 479, 419-422.

Sakai Y
Oh E, Kang H, Yamaguchi S, Park J, Lee D, Kamiya Y, Chio G (2009) Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell 21, 403-419.

2011.11.17 Sugimoto M
Strader LC, Wheeler DL, Christensen SE, Berens JC, Cohen JD, Rampey RA, Bartel B (2011) Multiple facets of Arabidopsis seedling development require indole-3-butyric acid-derived auxin. Plant Cell 23, 984-999.

Yamanaka H
Ito H, Gaubert H, Bucher E, Mirouze M, Vaillant I, Paszkowski J (2011) An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature 472, 115-119.

2011.10.27 Yamamoto YY
Berger MF, Philippakis AA, Qureshi AM, He FS, Estep III PW, Bulyk ML (2006) Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature Biotech 24, 1429-1435.
Kim, MJ, Lee TH, Pahk YM, Him YH, Park HM, Chio YD, Nahm BH, Kim YK (2009) Quadraple 9-mer-based protein binding microarray with DsRed fusion protein. BMC Mol Biol 10, 91.

Kobayashi Yuriko
Brawand D et al (2011) The evolution of gene expression levels in mammalian organs. Nature 478, 343-348.

2011.10.21 Asai M
Ligaba A, Kochian L, Piñeros M (2009) Phosphorylation at S384 regulates the activity of the TaALMT1 malate transporter that underlies aluminum resistance in wheat. Plant J 60, 411-423.

Hieno A
Szechynska-Hebda M, Kruk J, Górecka M, Karpinska B, Karpinski S (2010) Evidence for light wavelength-specific photoelectrophysiological signaling and memory of excess light episodes in Arabidopsis. Plant Cell 22, 2201-2218.

2011.10.13 Shimo E
Chen C-C, Chen Y-Y, Tang I-C, Liang H-M, Lai C-C, Chiou J-M, Yeh K-C (2011) Arabidopsis SUMO E3 ligase SIZ1 is involved in excess copper tolerance. Plant Physiol 156, 2225-2234.

May ~ Sep Season: Vote by Participants

2011.10.13 Naznin HA
Qiu Y, Yu D (2009) Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis. Environ Exp Bot 65, 35-47.
2011.9.20 Zhao CR
Sun Q, Zhao L, Li K, Zhang J (2010) Identification of a new 130 bp cis-acting element in the TsVP1 promoter involved in the salt stress response from Thellungiella halophila. BMC Plant Biol 10, 90.

2011.9.13 Sawaki K
Nagarajan VK, Jain A, Poling MD, Lewis AJ, Raghothama KG, Smith AP (2011) Arabidopsis Pht1;5 mobilizes phosphate between source and sink organs and influences the interaction between phosphate homeostasis and ethylene signaling. Plant Physiol 156, 1149-1163.

Yoshioka Y: 3rd Place
Mendes R, Kruijt M, deBruijn I, Dekkers E, van der Voort M, Schneider JHM, Piceno YM, DeSantis TZ, Andersen GL, Bakker PAHM, Raaijmakers JM (2011) Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 332, 1097-1100. 

Sakai Y: 1st Place
Doherty CJ, van Buskirk HA, Myers SJ, Thomashow MF (2009) Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell 21, 972-984.

2011.9.2 特別セミナー
香川大学遺伝子 多田安臣先生

2011.8.30 Yamanaka H
Xia J, Yamaji N, Kasai T, Ma JF (2010) Plasma membrane-located transporter for aluminum in rice. Proc Natl Acad Sci, USA 107, 18381-18385.

Tokizawa M: 2nd Place
Someya S et al, (2010) Sirt3 mediates reduction of oxidative damage and prevention of age-related hearing loss under caloric restriction. Cell 143, 802-812. 

2011.8.2 Nazunin HA
Mehrotra R, Mehrotra S (2010) Promoter activation by ACGT in response to salicylic and abscisic acids is differentially regulated by the spacing between two copies of the motif. J Plant Physiol 167, 1214-1218.

Hieno A
Yamagushi Y, Huffaker A, Bryan AC, Tax FE, Ryan CA (2010) PEPR2 is a second receptor for the Pep1 and Pep2 peptides and contributes to defense responses in Arabidopsis. Plant Cell 22, 508-522.

2011.7.26 Shimo E
Lequeux H, Hermans C, Lutts S, Verbruggen N (2010) Response to copper excess in Arabidopsis thaliana: impact on the root system architecture, hormone distribution, lignin accumulation and mineral profile. Plant Phsiol Biochem 48, 673-682.

2011.7.19 Yoshioka Y
Wang RS, Pandey S, Li S, Gookin TE, Zhao Z, Albert R, Assmann SM (2011) Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells. BMC Genomics 12, 216.

Kobayashi Yuriko
Baxter I, Brazelton JN, Yu D, Huang YS, Lahner B, Yakubova E, Li Y, Bergelson J, Borevitz JO, Nordborg , Vitek O, Salt DE (2010) A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. PLoS Genet 6, e1001193.

2011.7.12 Yamamoto YY
Rebeiz M, Pool JE, Kassner VA, Aquadro CF, Carroll SB (2009) Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population. Science 326, 1663-1667.
Frankel N, Erezylmaz DF, McGregor AP, Wang S, Payre F, Stern DL (2011) Morphological evolution caused by many subtle-effect substitutions in regulatory DNA Nature 474, 598-603.

2011.7.5 Sugimoto M
Fujita H, Versluesa PE, Zhu JK (2011) Arabidopsis decuple mutant reveals  the importance of SnRK2 kinases in osmotic stress responses in vivo. Proc Natl Acad Sci, USA 108, 1717-1722.

2011.6.28 Asai N
Miyashita Y, Good AG (2008) Contribution of the GABA shunt to hypoxia-induced alanine accumulation in roots of Arabidopsis thaliana. Plant Cell Physiol  49, 92-102.

2011.6.21 Tokizawa M
Tsutsui T, Yamaji N, Ma JF (2011) Identification of a cis-acting element of ART1, a C2H2-type zinc finger transcription factor for alminum tolerance  in rice. Plant Physiol 156, 925-931.

Yamanaka H
Guo LH, Yin Y, Howell SH (2009) Regulation and processing of a plant peptide hormone, AtRALF23, in Arabidopsis. Plant J 59, 930-939.

2011.6.7 Shimo E
Yamasaki H, Hayashi M, Fukazawa M, Kobayashi Y, Shikanai T (2009) SQUAMOSA Promoter Binding Protein-Like7 is a central regulator for copper homeostasis in Arabidopsis. Plant Cell 21, 347-361.

2011.5.31 Sawaki K
Sasaki T, Mori IC, Furuichi T, Munemasa S, Toyooka K, Matsuoka K, Murata Y, Yamamoto Y (2010) Closing plant stomata requires a homolog of an aluminum-activated malate transporter. Plant Cell Physiol 51, 354-365.

Yamashita Y
Furuta, K, Kubo M, Sano K, Demura T, Fukuda H, Liu YG, Shibata D, Kakimoto T (2011) The CKH2/PKL chromatin remodeling factor negatively regulates cytokinin responses in Arabidopsis calli. Plant Cell Physiol 52, 618-628.

2011.5.24 Sakai Y
Yang YT, Yu YL, Yang GD, Zhang JD, Zheng CC (2009) Tissue-specific expression of the PNZIP promoter is mediated by combinatorial interaction of differentr cis-elements and a novel transcriptional factor. Nucleic Acids Res 37, 2630-2644.

2011.5.17 Hieno A
Jaskiewicz M, Conrath U, Peterhänsel C (2011) Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. EMBO Reports 12, 50-55.

Naznin HA
Lherminier J et al (2009) NADPH oxidase-mediated reactive oxygen species production: subcellular localization and reassessment of its role in plant defense. MPMI 22, 868-881.

2011.5.10 Yoshioka Y
Wang W, Barnaby JY, Tada Y, Li H, Tor M, Caldelan D, Lee D, Fu XD, Dong X (2011) Timing of plant immune responses by a central circadian regulator. Nature 470, 110-114.

2011.4.21 Yamamoto YY
Rizzini L, Favory JJ, Cloix C, Faggionato D, O’Hara A, Kaiserli E, Baumeister R, Schäfer E, Nagy F, Jenkis GI, Ulm R (2011) Perception of UV-B by the Arabidopsis UVR8 protein. Science 332: 103-106.

2011.4.11 Sakai Y
Yang T, Poovaiah BW (2002) A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J Biol Chem 277, 45049-45058.

2011.4.4 Hieno A
Dubouzet JG, Maeda S, Sugano S, Ohtake M, Hayashi N, Ichikawa T, Kondou Y, Hori Y, Matsui M, Oda K, Hirochika H, Takatsuji H, Mori M (2011) Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice. Plant Biotechnol J, in press.

12.13 Yamashita Y
Yamamoto YY,,, Obokata J (2009) Heterogeneity of Arabidopsis core promoters revealed by high-density TASS analysis. Plant J 60: 350-362.

12.2 Naznin HA
Orozco-Cardenas ML, Narvalez-Vasquez J, Ryan CA (2001) Hydrogen peroxide acts as an second messenger for the induction of defense genes in tomato plants in response to wounding, systemin, and methyl jasmonate. Plant Cell 13: 179-191.

11.25 Sakai Y
Sfrany J,,, Nagy F (2008) Identification of a novel cis-regulatory element for UV-B-induced transcription in Arabidopsis. Plant J 54: 402-414.

11.18 Yoshioka Y
Haas BJ,,,Nusbaum C (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461, 393-398.

11.10 Yamamoto YY
Rusch DB,,, JC Venter (2007) The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 5: e77.
Yooseph S,, JC Venter (2010) Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature 468: 60-67.
10.29 Hieno A
Kazan K, Manners JM (2008) Jasmonate signaling: toward an integrated view. Plant Physiol 146: 1459-1468.

10.21 Yoshioka Y
Magori S, Oka-Kira E, Shibata S, Umehara Y, Kouchi H, Hase Y, Tanaka A, Sato S, Tabata S, Kawguchi M (2009) TOO MUCH LOVE, a root regulator associated with the long-distance control of noduliation in Lotus japonius. MPMI 22, 259-268.

9.29 Naznin HA
Du L, Ali GS, Simons KA, Hou J, Yang T, Reddy ASN, Poovaiah BW (2009) Ca2+/calmodulin regulates salycylic-acid-mediated plant immunity Nature 457: 1154-1158.

9.27 特別セミナー
京大・理 小山時隆先生

8.16 Yamamoto YY
Segal E et al. (2006) A genomic code for nucleosome positioning, Nature 442: 772-778.
Kaplan N et al. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome, Nature 458: 362-366.
Sasaki S et al. (2009) Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites, Science 323: 401-404.
Chodavarapu RK et al. (2010) Relationship between nucleosome positioning and DNA methylation, Nature 466: 388-392.

7.9 Sakai Y
Puente P, Wei N, Deng XW (1996) Combinatorial interplay of promoter elements constitutes the minimal determinants for light and developmental control of gene expression in Arabidopsis, EMBO J 15, 3732-3743.

6.23 Hieno A
Kariola T, Brader G, Li J, Palva ET (2004) Chlorophyllase 1, a damage control enzyme, affects the balance between defence pathways in plants, Plant Cell 17, 282-294.

6.14  Naznin HA
Yasuda M,,, Nakashita H (2008) Antagonistic interaction between systemic acquired resistance and the abscisic acid-mediated abiotic stress response in Arabidopsis, Plant Cell 20, 1678-1692.

31 Yoshioka Y
Ma LJ,,,, Rep M (2010) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium,  Nature 464, 367-373. 

2010. 5.14 Yamamoto YY
Atwell S,,,,Nordborg M (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines, Nature (in press)

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Highly Cited Researchers of Gifu University