Useful links for lecture 20131121

20131121,

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NCBI: http://www.ncbi.nlm.nih.gov/
DDBJ: http://www.ddbj.nig.ac.jp/
GenomeNet: http://www.genome.jp/
EBI: http://www.ebi.ac.uk/
ExPASy: http://www.expasy.org/

Clustalw in GenomeNet: http://www.genome.jp/tools/clustalw/

SWISS-MODEL: http://swissmodel.expasy.org/
Spanner, Hybrid-Template Modeling: http://pdbj.org/spanner/

PDBj: http://www.pdbj.org/
RCSB PDB: http://www.rcsb.org/pdb/

DisPort: http://www.disprot.org/
IDEAL: http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/
DISOPRED2: http://bioinf.cs.ucl.ac.uk/disopred/
POODLE: http://mbs.cbrc.jp/poodle/

PyMol: http://pymol.org/
PyMOL Wiki: http://pymolwiki.org/
PyMOLを使ってタンパク質の構造を見る(基本編): http://togotv.dbcls.jp/20090617.html  -> use 3b7e.pdb
PyMOLを使い倒す(応用編): http://togotv.dbcls.jp/20090707.html

Dali pairwise comparison: http://ekhidna.biocenter.helsinki.fi/dali_lite/start
Dali server: http://ekhidna.biocenter.helsinki.fi/dali_server/start

BMRBj: http://bmrb.protein.osaka-u.ac.jp/

Compute pI/Mw: http://web.expasy.org/compute_pi/