# -*- coding: utf-8 -*-
#
# test documentation build configuration file, created by
# sphinx-quickstart on Wed Apr 19 20:10:50 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

# Below is to reduce font size in code block
# \tiny         5pt
# \scriptsize   7pt
# \footnotesize 8pt
# \small        9pt
#


from sphinx.highlighting import PygmentsBridge
from pygments.formatters.latex import LatexFormatter

class CustomLatexFormatter(LatexFormatter):
    def __init__(self, **options):
        super(CustomLatexFormatter, self).__init__(**options)
        self.verboptions = r"formatcom=\scriptsize"

PygmentsBridge.latex_formatter = CustomLatexFormatter

# for jupyter-notebook

from recommonmark.parser import CommonMarkParser

source_parsers = {
    '.md': CommonMarkParser,
}

from recommonmark.transform import AutoStructify

github_doc_root = 'https://github.com/rtfd/recommonmark/tree/master/doc/'
def setup(app):
    app.add_config_value('recommonmark_config', {
            'url_resolver': lambda url: github_doc_root + url,
            'auto_toc_tree_section': 'Contents',
            }, True)
    app.add_transform(AutoStructify)
    

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.mathjax',
#    'sphinxcontrib.blockdiag',
#    'sphinxcontrib.actdiag',
    'sphinx.ext.graphviz',
    'nbsphinx',
]

# Fontpath for blockdiag (truetype font)
#blockdiag_fontpath = '/usr/share/fonts/truetype/takao-gothic/TakaoPGothic.ttf'

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
source_suffix = ['.rst', '.md']
#  source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'NewTitle'
copyright = u'nendo, 岐阜大学大学院　自然科学技術研究科　藤澤研究室　Fujisawa'
author = u'岐阜大学大学院　自然科学技術研究科　藤澤研究室　Fujisawa'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = u'1.0'
# The full version, including alpha/beta/rc tags.
release = u'1.0'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = 'ja'

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = []

# The reST default role (used for this markup: `text`) to use for all
# documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
#keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

import sphinx_rtd_theme
html_theme = 'sphinx_rtd_theme'
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
# html_theme = 'alabaster'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#html_extra_path = []

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr'
#html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# Now only 'ja' uses this config value
#html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'outputdoc'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
'papersize': 'a4paper',

# The font size ('10pt', '11pt' or '12pt').
'pointsize': '12pt',

# geometry
'geometry': '\\usepackage[vmargin=2cm, hmargin=2cm]{geometry}',
#babel
'babel': '\\usepackage[japanese]{babel}',

# Additional stuff for the LaTeX preamble.
'preamble': r'''

\setlength\parindent{1zw} 
\renewcommand{\baselinestretch}{0.8}

\usepackage[version=4]{mhchem}
\usepackage{siunitx}
\usepackage{chemfig}

\makeatletter
 
\renewcommand{\sphinxmaketitle}{
\begin{titlepage}
\begin{center}
\vspace*{50truept}
{\LARGE nendo年度}\\ % title
\vspace*{10truept}
{\LARGE 修士論文}\\ % title
\vspace*{90truept}
{\Huge NewTitle}\\ % title
\vspace{170truept}
{\LARGE 岐阜大学大学院 自然科学技術研究科\\生命科学・化学専攻\\生命工学化学領域 藤澤研究室}\\ % number
\vspace{50truept}
{\LARGE Fujisawa}\\ % author
\vspace{50truept}
{\Large \today}\\ % date
\end{center}
\end{titlepage}
}

\@addtoreset{equation}{section} \def\theequation{\thesection.\arabic{equation}}


\makeatother

\pagestyle{plain}
\thispagestyle{plain}
\renewcommand{\bibname}{参考文献} % jbook、jreportクラス

'''



# Latex figure (float) alignment
#'figure_align': 'htbp',

#'extraclassoptions': 'report',

}

#latex_elements['tableofcontents'] = r'''
#\pagenumbering{arabic} % page numbering as arabic
#\pagestyle{normal} % page set to normal
#'''

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'output.tex', u'NewTitle',
     u'岐阜大学大学院　自然科学技術研究科　藤澤研究室　Fujisawa', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# Numbering tables and figures
numfig=True
numfig_secnum_depth=2

# LaTeX の docclass 設定
#'howto': 'jsarticle'
latex_docclass = {
    'howto': 'ujarticle',
    'manual': 'ujbook',
#    'howto': 'article',
#    'manual': 'book',

}



# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'output', u'NewTitle',
     [author], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'output', u'NewTitle',
     author, 'output', 'One line description of project.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#texinfo_no_detailmenu = False